PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G45230.1
Common NameLOC102712143
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 646aa    MW: 71365 Da    PI: 5.6249
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G45230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.1e-07113134426
                   ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   ++C +f++ G C  GdrC F H 
  OB02G45230.1 113 VPCYYFQK-GMCAKGDRCAFLHL 134
                   69******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.9E-41745IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6381746IPR000571Zinc finger, CCCH-type
PfamPF156632.1E-111872No hitNo description
PROSITE profilePS5010310.7374874IPR000571Zinc finger, CCCH-type
SMARTSM003562.55073IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.882109136IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-5110135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.67E-5112133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4114133IPR000571Zinc finger, CCCH-type
PfamPF146082.5114133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MDSAVRPPPV DEEDARRRRS TDCIYFLASP LTCKKGSECE YRHSDAARVN PRDCWYWFNG  60
NCANPKCSFR HPPLDGLIGA PTTPRTSQQS APQAQPAQAP VSNPTSGIAK QGVPCYYFQK  120
GMCAKGDRCA FLHLPQTTGN PAPQHTAKVF APASVPHPQL KNSWTKPNAS AQQNAPPATF  180
GRPKDSAHNG KPAQKPSLTN RPDHSTGIIH DKSSYMPSSV TKNYRPLPTI GDDLAENGME  240
MGEFVREPSA GSDVLTGGAD DNAEQSLRED RSTYRRTNGD QHIGVLRQTH GNYGFERSHR  300
SSSEKLLSES RFSHREPMPS PADNSDLRQR LLKQRRLNNP RSGHVSDRHN IYLEDERHDH  360
HRRRGEEQAS HDGVSSSRLK GRIKLPAETS FDRLGLQPEK ERERGPRARS PPPNQTDLRG  420
KLHDRLKARP NEDVSANVKS SLAKANSGED ADSLNFAGPK SLAELKAKKV VGSTGGHSVK  480
SAGSLAGPVR MTSEIVAVKE SSDLVPFDGP KPLDAILKRK READPRNATD SGNRLEEHTI  540
GDEGSQFQNN EEDIVGTNTE GNEEAYQADD DLVYGDSMSP ADDIAAETAD DARKELEEQQ  600
NTEPAEEYDY EMDDVNAEDE NDYQEYEDDD LEDDDDFARK VGVMIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648173.10.0PREDICTED: zinc finger CCCH domain-containing protein 19-like
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLJ3LIQ60.0J3LIQ6_ORYBR; Uncharacterized protein
STRINGOB02G45230.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123